Detailed information of SNP:
|
SNP ID:
sf1215649642(Gbrowse)
Chromosome: chr12 Position: 15649642 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 94.43% | 5.57% |
| All Indica | 795 | 98.49% | 1.51% |
| All Japonica | 485 | 89.90% | 10.10% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 329 | 95.74% | 4.26% |
| Tropical Japonica | 90 | 70.00% | 30.00% |
| Japonica Intermediate | 66 | 87.88% | 12.12% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215649642 | G->A | LOC_Os12g26710(LOC_Os12g26710.1) | INTRON |