Detailed information of SNP:
|
SNP ID:
sf1215650372(Gbrowse)
Chromosome: chr12 Position: 15650372 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 64.65% | 35.35% |
| All Indica | 755 | 85.83% | 14.17% |
| All Japonica | 492 | 26.63% | 73.37% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 354 | 82.77% | 17.23% |
| Indica II | 207 | 92.75% | 7.25% |
| Indica Intermediate | 194 | 84.02% | 15.98% |
| Temperate Japonica | 335 | 8.06% | 91.94% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 65 | 27.69% | 72.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215650372 | A->C | LOC_Os12g26710(LOC_Os12g26710.1) | INTRON |