Detailed information of SNP:
|
SNP ID:
sf1215650377(Gbrowse)
Chromosome: chr12 Position: 15650377 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1314 | 67.81% | 32.19% |
| All Indica | 708 | 47.46% | 52.54% |
| All Japonica | 492 | 96.75% | 3.25% |
| Aus | 60 | 60.00% | 40.00% |
| Indica I | 321 | 48.60% | 51.40% |
| Indica II | 200 | 47.50% | 52.50% |
| Indica Intermediate | 187 | 45.45% | 54.55% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 86.81% | 13.19% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215650377 | G->A | LOC_Os12g26710(LOC_Os12g26710.1) | INTRON |