Detailed information of SNP:
|
SNP ID:
sf1215651061(Gbrowse)
Chromosome: chr12 Position: 15651061 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 86.33% | 13.67% |
| All Indica | 799 | 92.24% | 7.76% |
| All Japonica | 497 | 82.49% | 17.51% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215651061 | T->C | LOC_Os12g26710(LOC_Os12g26710.1) | INTRON |