Detailed information of SNP:
|
SNP ID:
sf1215651109(Gbrowse)
Chromosome: chr12 Position: 15651109 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1311 | 51.72% | 48.28% |
| All Indica | 701 | 68.62% | 31.38% |
| All Japonica | 492 | 21.54% | 78.46% |
| Aus | 65 | 78.46% | 21.54% |
| Indica I | 326 | 63.80% | 36.20% |
| Indica II | 196 | 79.59% | 20.41% |
| Indica Intermediate | 179 | 65.36% | 34.64% |
| Temperate Japonica | 334 | 7.19% | 92.81% |
| Tropical Japonica | 92 | 76.09% | 23.91% |
| Japonica Intermediate | 66 | 18.18% | 81.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215651109 | T->C | LOC_Os12g26710(LOC_Os12g26710.1) | INTRON |