Detailed information of SNP:
|
SNP ID:
sf1215651681(Gbrowse)
Chromosome: chr12 Position: 15651681 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1287 | 62.08% | 37.92% |
| All Indica | 692 | 47.98% | 52.02% |
| All Japonica | 484 | 82.85% | 17.15% |
| Aus | 61 | 65.57% | 34.43% |
| Indica I | 315 | 46.35% | 53.65% |
| Indica II | 192 | 52.60% | 47.40% |
| Indica Intermediate | 185 | 45.95% | 54.05% |
| Temperate Japonica | 334 | 92.51% | 7.49% |
| Tropical Japonica | 85 | 45.88% | 54.12% |
| Japonica Intermediate | 65 | 81.54% | 18.46% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 36 | 63.89% | 36.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215651681 | T->A | LOC_Os12g26710(LOC_Os12g26710.1) | INTRON |