Detailed information of SNP:
|
SNP ID:
sf1215660086(Gbrowse)
Chromosome: chr12 Position: 15660086 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1342 | 91.28% | 8.72% |
| All Indica | 795 | 99.62% | 0.38% |
| All Japonica | 426 | 73.71% | 26.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 208 | 99.52% | 0.48% |
| Temperate Japonica | 273 | 60.44% | 39.56% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 59 | 93.22% | 6.78% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215660086 | C->T | INTERGENIC | None |