Detailed information of SNP:
|
SNP ID:
sf1215662735(Gbrowse)
Chromosome: chr12 Position: 15662735 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 63.92% | 36.08% |
| All Indica | 788 | 37.06% | 62.94% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 26.95% | 73.05% |
| Indica II | 209 | 45.93% | 54.07% |
| Indica Intermediate | 208 | 46.15% | 53.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215662735 | C->G | INTERGENIC | None |