Detailed information of SNP:
|
SNP ID:
sf1215666787(Gbrowse)
Chromosome: chr12 Position: 15666787 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 88.31% | 11.69% |
| All Indica | 773 | 89.39% | 10.61% |
| All Japonica | 487 | 86.65% | 13.35% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 364 | 92.03% | 7.97% |
| Indica II | 206 | 88.83% | 11.17% |
| Indica Intermediate | 203 | 85.22% | 14.78% |
| Temperate Japonica | 332 | 92.77% | 7.23% |
| Tropical Japonica | 90 | 63.33% | 36.67% |
| Japonica Intermediate | 65 | 87.69% | 12.31% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 37 | 86.49% | 13.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215666787 | A->T | INTERGENIC | None |