Detailed information of SNP:
|
SNP ID:
sf1215669141(Gbrowse)
Chromosome: chr12 Position: 15669141 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 53.62% | 46.38% |
| All Indica | 792 | 31.57% | 68.43% |
| All Japonica | 497 | 92.15% | 7.85% |
| Aus | 66 | 18.18% | 81.82% |
| Indica I | 375 | 20.27% | 79.73% |
| Indica II | 207 | 43.48% | 56.52% |
| Indica Intermediate | 210 | 40.00% | 60.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215669141 | G->A | LOC_Os12g26740(LOC_Os12g26740.1) | INTRON |