Detailed information of SNP:
|
SNP ID:
sf1215670945(Gbrowse)
Chromosome: chr12 Position: 15670945 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 87.15% | 12.85% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 496 | 79.03% | 20.97% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 67 | 71.64% | 28.36% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215670945 | C->T | INTERGENIC | None |