Detailed information of SNP:
|
SNP ID:
sf1215671071(Gbrowse)
Chromosome: chr12 Position: 15671071 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1289 | 68.89% | 31.11% |
| All Indica | 673 | 52.75% | 47.25% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 65 | 55.38% | 44.62% |
| Indica I | 311 | 36.98% | 63.02% |
| Indica II | 185 | 69.19% | 30.81% |
| Indica Intermediate | 177 | 63.28% | 36.72% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215671071 | C->A | INTERGENIC | None |