Detailed information of SNP:
|
SNP ID:
sf1215673105(Gbrowse)
Chromosome: chr12 Position: 15673105 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1352 | 89.72% | 10.28% |
| All Indica | 744 | 93.28% | 6.72% |
| All Japonica | 488 | 86.27% | 13.73% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 354 | 95.48% | 4.52% |
| Indica II | 200 | 92.50% | 7.50% |
| Indica Intermediate | 190 | 90.00% | 10.00% |
| Temperate Japonica | 330 | 93.64% | 6.36% |
| Tropical Japonica | 91 | 61.54% | 38.46% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215673105 | G->A | LOC_Os12g26750(LOC_Os12g26750.1) | Non-Synonymous SNP |