Detailed information of SNP:
|
SNP ID:
sf1215675297(Gbrowse)
Chromosome: chr12 Position: 15675297 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1275 | 57.73% | 42.27% |
| All Indica | 680 | 79.71% | 20.29% |
| All Japonica | 480 | 19.79% | 80.21% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 307 | 77.52% | 22.48% |
| Indica II | 190 | 84.21% | 15.79% |
| Indica Intermediate | 183 | 78.69% | 21.31% |
| Temperate Japonica | 330 | 4.55% | 95.45% |
| Tropical Japonica | 85 | 77.65% | 22.35% |
| Japonica Intermediate | 65 | 21.54% | 78.46% |
| Group VI/Aromatic | 10 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215675297 | C->T | INTERGENIC | None |