Detailed information of SNP:
|
SNP ID:
sf1215680345(Gbrowse)
Chromosome: chr12 Position: 15680345 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1352 | 60.80% | 39.20% |
| All Indica | 741 | 82.59% | 17.41% |
| All Japonica | 490 | 22.45% | 77.55% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 335 | 82.09% | 17.91% |
| Indica II | 201 | 83.58% | 16.42% |
| Indica Intermediate | 205 | 82.44% | 17.56% |
| Temperate Japonica | 333 | 5.71% | 94.29% |
| Tropical Japonica | 91 | 82.42% | 17.58% |
| Japonica Intermediate | 66 | 24.24% | 75.76% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215680345 | T->C | LOC_Os12g26760(LOC_Os12g26760.1) | Non-Synonymous SNP |