Detailed information of SNP:
|
SNP ID:
sf1215683694(Gbrowse)
Chromosome: chr12 Position: 15683694 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 95.15% | 4.85% |
| All Indica | 785 | 92.99% | 7.01% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 367 | 94.55% | 5.45% |
| Indica II | 209 | 92.82% | 7.18% |
| Indica Intermediate | 209 | 90.43% | 9.57% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215683694 | T->C | LOC_Os12g26770(LOC_Os12g26770.1) | INTRON |