Detailed information of SNP:
|
SNP ID:
sf1215687651(Gbrowse)
Chromosome: chr12 Position: 15687651 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1346 | 58.99% | 41.01% |
| All Indica | 748 | 78.07% | 21.93% |
| All Japonica | 481 | 23.28% | 76.72% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 348 | 82.76% | 17.24% |
| Indica II | 201 | 73.63% | 26.37% |
| Indica Intermediate | 199 | 74.37% | 25.63% |
| Temperate Japonica | 330 | 7.88% | 92.12% |
| Tropical Japonica | 86 | 77.91% | 22.09% |
| Japonica Intermediate | 65 | 29.23% | 70.77% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 78.38% | 21.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215687651 | A->G | LOC_Os12g26780(LOC_Os12g26780.1) | Non-Synonymous SNP |