Detailed information of SNP:
|
SNP ID:
sf1215696524(Gbrowse)
Chromosome: chr12 Position: 15696524 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 63.31% | 36.69% |
| All Indica | 772 | 87.95% | 12.05% |
| All Japonica | 487 | 19.51% | 80.49% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 359 | 90.53% | 9.47% |
| Indica II | 208 | 88.46% | 11.54% |
| Indica Intermediate | 205 | 82.93% | 17.07% |
| Temperate Japonica | 331 | 4.53% | 95.47% |
| Tropical Japonica | 89 | 71.91% | 28.09% |
| Japonica Intermediate | 67 | 23.88% | 76.12% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215696524 | A->G | LOC_Os12g26790(LOC_Os12g26790.1) | Synonymous |