Detailed information of SNP:
|
SNP ID:
sf1215704188(Gbrowse)
Chromosome: chr12 Position: 15704188 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1346 | 60.33% | 39.67% |
| All Indica | 745 | 84.97% | 15.03% |
| All Japonica | 482 | 17.22% | 82.78% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 336 | 86.90% | 13.10% |
| Indica II | 201 | 86.07% | 13.93% |
| Indica Intermediate | 208 | 80.77% | 19.23% |
| Temperate Japonica | 331 | 4.53% | 95.47% |
| Tropical Japonica | 83 | 63.86% | 36.14% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215704188 | C->T | INTERGENIC | None |