Detailed information of SNP:
|
SNP ID:
sf1215718315(Gbrowse)
Chromosome: chr12 Position: 15718315 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1193 | 79.80% | 20.20% |
| All Indica | 612 | 67.32% | 32.68% |
| All Japonica | 476 | 97.69% | 2.31% |
| Aus | 56 | 64.29% | 35.71% |
| Indica I | 295 | 77.29% | 22.71% |
| Indica II | 161 | 54.04% | 45.96% |
| Indica Intermediate | 156 | 62.18% | 37.82% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 77 | 92.21% | 7.79% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 38 | 73.68% | 26.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215718315 | A->G | LOC_Os12g26830(LOC_Os12g26830.1) | INTRON |