Detailed information of SNP:
|
SNP ID:
sf1215724103(Gbrowse)
Chromosome: chr12 Position: 15724103 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 88.59% | 11.41% |
| All Indica | 772 | 90.80% | 9.20% |
| All Japonica | 491 | 87.17% | 12.83% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 361 | 93.63% | 6.37% |
| Indica II | 210 | 88.57% | 11.43% |
| Indica Intermediate | 201 | 88.06% | 11.94% |
| Temperate Japonica | 332 | 93.07% | 6.93% |
| Tropical Japonica | 92 | 65.22% | 34.78% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 36 | 77.78% | 22.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215724103 | C->T | LOC_Os12g26840(LOC_Os12g26840.1) | Non-Synonymous SNP |