Detailed information of SNP:
|
SNP ID:
sf1215724860(Gbrowse)
Chromosome: chr12 Position: 15724860 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1391 | 83.54% | 16.46% |
| All Indica | 778 | 87.53% | 12.47% |
| All Japonica | 493 | 81.34% | 18.66% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 365 | 92.05% | 7.95% |
| Indica II | 210 | 83.81% | 16.19% |
| Indica Intermediate | 203 | 83.25% | 16.75% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 91 | 40.66% | 59.34% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215724860 | T->C | INTERGENIC | None |