Detailed information of SNP:
|
SNP ID:
sf1215726940(Gbrowse)
Chromosome: chr12 Position: 15726940 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 91.75% | 8.25% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 496 | 94.96% | 5.04% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215726940 | T->C | LOC_Os12g26850(LOC_Os12g26850.1) | Non-Synonymous SNP |