Detailed information of SNP:
|
SNP ID:
sf1215731426(Gbrowse)
Chromosome: chr12 Position: 15731426 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 91.32% | 8.68% |
| All Indica | 797 | 88.83% | 11.17% |
| All Japonica | 493 | 94.93% | 5.07% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 374 | 90.11% | 9.89% |
| Indica II | 212 | 86.32% | 13.68% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 91 | 78.02% | 21.98% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 2 | 100.00% | 0.00% |
| Intermediate | 36 | 86.11% | 13.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215731426 | G->T | LOC_Os12g26850(LOC_Os12g26850.1) | Non-Synonymous SNP |