Detailed information of SNP:
|
SNP ID:
sf1215739139(Gbrowse)
Chromosome: chr12 Position: 15739139 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 89.64% | 10.36% |
| All Indica | 782 | 88.87% | 11.13% |
| All Japonica | 496 | 94.56% | 5.44% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 370 | 90.54% | 9.46% |
| Indica II | 207 | 85.02% | 14.98% |
| Indica Intermediate | 205 | 89.76% | 10.24% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 77.42% | 22.58% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215739139 | G->C | LOC_Os12g26860(LOC_Os12g26860.1) | INTRON |