Detailed information of SNP:
|
SNP ID:
sf1215743592(Gbrowse)
Chromosome: chr12 Position: 15743592 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1338 | 94.02% | 5.98% |
| All Indica | 748 | 90.24% | 9.76% |
| All Japonica | 489 | 98.77% | 1.23% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 352 | 89.20% | 10.80% |
| Indica II | 199 | 92.46% | 7.54% |
| Indica Intermediate | 197 | 89.85% | 10.15% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 94.32% | 5.68% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 3 | 100.00% | 0.00% |
| Intermediate | 34 | 97.06% | 2.94% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215743592 | G->A | LOC_Os12g26860(LOC_Os12g26860.1) | Non-Synonymous SNP |