Detailed information of SNP:
|
SNP ID:
sf1215760835(Gbrowse)
Chromosome: chr12 Position: 15760835 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 56.24% | 43.76% |
| All Indica | 799 | 73.97% | 26.03% |
| All Japonica | 497 | 23.74% | 76.26% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 39.44% | 60.56% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 8.36% | 91.64% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215760835 | T->C | LOC_Os12g26890(LOC_Os12g26890.1) | Non-Synonymous SNP |