Detailed information of SNP:
|
SNP ID:
sf1215766832(Gbrowse)
Chromosome: chr12 Position: 15766832 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 96.21% | 3.79% |
| All Indica | 782 | 94.12% | 5.88% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 90.48% | 9.52% |
| Indica I | 368 | 97.55% | 2.45% |
| Indica II | 208 | 92.79% | 7.21% |
| Indica Intermediate | 206 | 89.32% | 10.68% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215766832 | G->T | LOC_Os12g26910(LOC_Os12g26910.1) | Non-Synonymous SNP |