Detailed information of SNP:
|
SNP ID:
sf1215766919(Gbrowse)
Chromosome: chr12 Position: 15766919 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1358 | 66.42% | 33.58% |
| All Indica | 740 | 51.35% | 48.65% |
| All Japonica | 496 | 92.54% | 7.46% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 344 | 30.23% | 69.77% |
| Indica II | 208 | 82.21% | 17.79% |
| Indica Intermediate | 188 | 55.85% | 44.15% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215766919 | G->A | INTERGENIC | None |