Detailed information of SNP:
|
SNP ID:
sf1215768044(Gbrowse)
Chromosome: chr12 Position: 15768044 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 93.35% | 6.65% |
| All Indica | 798 | 94.49% | 5.51% |
| All Japonica | 495 | 93.54% | 6.46% |
| Aus | 65 | 75.38% | 24.62% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 81.13% | 18.87% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 75.00% | 25.00% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215768044 | C->T | LOC_Os12g26920(LOC_Os12g26920.1) | Non-Synonymous SNP |