Detailed information of SNP:
|
SNP ID:
sf1215786845(Gbrowse)
Chromosome: chr12 Position: 15786845 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 51.69% | 48.31% |
| All Indica | 798 | 25.81% | 74.19% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 374 | 16.31% | 83.69% |
| Indica II | 213 | 32.86% | 67.14% |
| Indica Intermediate | 211 | 35.55% | 64.45% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215786845 | C->T | INTERGENIC | None |