Detailed information of SNP:
|
SNP ID:
sf1215791394(Gbrowse)
Chromosome: chr12 Position: 15791394 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 97.28% | 2.72% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 481 | 95.43% | 4.57% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 327 | 99.69% | 0.31% |
| Tropical Japonica | 87 | 79.31% | 20.69% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 11 | 81.82% | 18.18% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215791394 | A->C | LOC_Os12g26970(LOC_Os12g26970.1) | INTRON |