Detailed information of SNP:
|
SNP ID:
sf1215792199(Gbrowse)
Chromosome: chr12 Position: 15792199 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 81.28% | 18.72% |
| All Indica | 790 | 95.44% | 4.56% |
| All Japonica | 479 | 55.11% | 44.89% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 371 | 95.42% | 4.58% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 321 | 36.45% | 63.55% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 64 | 84.38% | 15.62% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215792199 | T->C | LOC_Os12g26970(LOC_Os12g26970.1) | Synonymous |