Detailed information of SNP:
|
SNP ID:
sf1215793211(Gbrowse)
Chromosome: chr12 Position: 15793211 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1376 | 54.58% | 45.42% |
| All Indica | 773 | 43.98% | 56.02% |
| All Japonica | 482 | 79.25% | 20.75% |
| Aus | 65 | 7.69% | 92.31% |
| Indica I | 357 | 37.82% | 62.18% |
| Indica II | 209 | 45.93% | 54.07% |
| Indica Intermediate | 207 | 52.66% | 47.34% |
| Temperate Japonica | 325 | 92.62% | 7.38% |
| Tropical Japonica | 91 | 35.16% | 64.84% |
| Japonica Intermediate | 66 | 74.24% | 25.76% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215793211 | A->G | LOC_Os12g26970(LOC_Os12g26970.1) | Non-Synonymous SNP |