Detailed information of SNP:
|
SNP ID:
sf1215798194(Gbrowse)
Chromosome: chr12 Position: 15798194 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 90.68% | 9.32% |
| All Indica | 797 | 84.32% | 15.68% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 86.36% | 13.64% |
| Indica II | 212 | 86.32% | 13.68% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215798194 | G->A | INTERGENIC | None |