Detailed information of SNP:
|
SNP ID:
sf1215798197(Gbrowse)
Chromosome: chr12 Position: 15798197 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 55.72% | 44.28% |
| All Indica | 791 | 43.24% | 56.76% |
| All Japonica | 496 | 79.84% | 20.16% |
| Aus | 66 | 36.36% | 63.64% |
| Indica I | 372 | 36.02% | 63.98% |
| Indica II | 210 | 43.81% | 56.19% |
| Indica Intermediate | 209 | 55.50% | 44.50% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215798197 | G->A | INTERGENIC | None |