Detailed information of SNP:
|
SNP ID:
sf1215798473(Gbrowse)
Chromosome: chr12 Position: 15798473 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1353 | 60.16% | 39.84% |
| All Indica | 746 | 48.93% | 51.07% |
| All Japonica | 491 | 81.06% | 18.94% |
| Aus | 60 | 46.67% | 53.33% |
| Indica I | 334 | 42.81% | 57.19% |
| Indica II | 208 | 49.52% | 50.48% |
| Indica Intermediate | 204 | 58.33% | 41.67% |
| Temperate Japonica | 334 | 93.71% | 6.29% |
| Tropical Japonica | 90 | 37.78% | 62.22% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215798473 | G->A | INTERGENIC | None |