Detailed information of SNP:
|
SNP ID:
sf1215799491(Gbrowse)
Chromosome: chr12 Position: 15799491 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 84.82% | 15.18% |
| All Indica | 788 | 74.49% | 25.51% |
| All Japonica | 493 | 98.38% | 1.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 75.00% | 25.00% |
| Indica II | 212 | 83.96% | 16.04% |
| Indica Intermediate | 208 | 63.94% | 36.06% |
| Temperate Japonica | 333 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215799491 | G->A | INTERGENIC | None |