Detailed information of SNP:
|
SNP ID:
sf1215800739(Gbrowse)
Chromosome: chr12 Position: 15800739 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 69.80% | 30.20% |
| All Indica | 795 | 95.72% | 4.28% |
| All Japonica | 497 | 24.55% | 75.45% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 208 | 90.87% | 9.13% |
| Temperate Japonica | 335 | 10.75% | 89.25% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215800739 | A->G | INTERGENIC | None |