Detailed information of SNP:
|
SNP ID:
sf1215806216(Gbrowse)
Chromosome: chr12 Position: 15806216 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 54.89% | 45.11% |
| All Indica | 793 | 45.15% | 54.85% |
| All Japonica | 496 | 79.03% | 20.97% |
| Aus | 66 | 6.06% | 93.94% |
| Indica I | 372 | 31.18% | 68.82% |
| Indica II | 212 | 56.60% | 43.40% |
| Indica Intermediate | 209 | 58.37% | 41.63% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 93 | 32.26% | 67.74% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215806216 | T->C | INTERGENIC | None |