Detailed information of SNP:
|
SNP ID:
sf1215806965(Gbrowse)
Chromosome: chr12 Position: 15806965 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1384 | 76.23% | 23.77% |
| All Indica | 766 | 62.79% | 37.21% |
| All Japonica | 496 | 95.77% | 4.23% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 368 | 77.17% | 22.83% |
| Indica II | 197 | 40.10% | 59.90% |
| Indica Intermediate | 201 | 58.71% | 41.29% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215806965 | A->G | INTERGENIC | None |