Detailed information of SNP:
|
SNP ID:
sf1215813277(Gbrowse)
Chromosome: chr12 Position: 15813277 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 77.44% | 22.56% |
| All Indica | 781 | 62.23% | 37.77% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 72.83% | 27.17% |
| Indica II | 206 | 51.46% | 48.54% |
| Indica Intermediate | 207 | 54.11% | 45.89% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215813277 | C->T | INTERGENIC | None |