Detailed information of SNP:
|
SNP ID:
sf1215823176(Gbrowse)
Chromosome: chr12 Position: 15823176 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 92.74% | 7.26% |
| All Indica | 798 | 96.49% | 3.51% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215823176 | G->A | INTERGENIC | None |