Detailed information of SNP:
|
SNP ID:
sf1215851740(Gbrowse)
Chromosome: chr12 Position: 15851740 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 62.93% | 37.07% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 9.86% | 90.14% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215851740 | C->T | INTERGENIC | None |