Detailed information of SNP:
|
SNP ID:
sf1215852285(Gbrowse)
Chromosome: chr12 Position: 15852285 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 62.82% | 37.18% |
| All Indica | 793 | 95.08% | 4.92% |
| All Japonica | 486 | 10.08% | 89.92% |
| Aus | 50 | 86.00% | 14.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 210 | 92.38% | 7.62% |
| Indica Intermediate | 208 | 89.42% | 10.58% |
| Temperate Japonica | 333 | 3.60% | 96.40% |
| Tropical Japonica | 93 | 30.11% | 69.89% |
| Japonica Intermediate | 60 | 15.00% | 85.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215852285 | T->C | INTERGENIC | None |