Detailed information of SNP:
|
SNP ID:
sf1215869118(Gbrowse)
Chromosome: chr12 Position: 15869118 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 63.60% | 36.40% |
| All Indica | 795 | 60.50% | 39.50% |
| All Japonica | 497 | 78.87% | 21.13% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 77.33% | 22.67% |
| Indica II | 212 | 30.66% | 69.34% |
| Indica Intermediate | 208 | 60.58% | 39.42% |
| Temperate Japonica | 335 | 89.85% | 10.15% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215869118 | A->G | INTERGENIC | None |