Detailed information of SNP:



SNP ID: sf1215873533(Gbrowse)

Chromosome: chr12

Position: 15873533
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 94.50% 5.50%
All Indica799 99.50% 0.50%
All Japonica497 89.34% 10.66%
Aus67 92.54% 7.46%
Indica I375 99.47% 0.53%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica335 94.03% 5.97%
Tropical Japonica94 71.28% 28.72%
Japonica Intermediate68 91.18% 8.82%
Group VI/Aromatic14 28.57% 71.43%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1215873533 C->T INTERGENIC None