Detailed information of SNP:
|
SNP ID:
sf1215876430(Gbrowse)
Chromosome: chr12 Position: 15876430 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1305 | 95.10% | 4.90% |
| All Indica | 731 | 95.90% | 4.10% |
| All Japonica | 475 | 96.00% | 4.00% |
| Aus | 44 | 77.27% | 22.73% |
| Indica I | 336 | 97.62% | 2.38% |
| Indica II | 201 | 95.52% | 4.48% |
| Indica Intermediate | 194 | 93.30% | 6.70% |
| Temperate Japonica | 333 | 97.90% | 2.10% |
| Tropical Japonica | 78 | 97.44% | 2.56% |
| Japonica Intermediate | 64 | 84.38% | 15.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215876430 | A->G | INTERGENIC | None |