Detailed information of SNP:



SNP ID: sf1215878405(Gbrowse)

Chromosome: chr12

Position: 15878405
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1407 97.65% 2.35%
All Indica798 99.87% 0.13%
All Japonica486 93.42% 6.58%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II212 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica326 90.49% 9.51%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate66 98.48% 1.52%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1215878405 C->T LOC_Os12g27096(LOC_Os12g27096.1) Synonymous