Detailed information of SNP:
SNP ID:
sf1215878405(Gbrowse)
Chromosome: chr12 Position: 15878405 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1407 | 97.65% | 2.35% |
All Indica | 798 | 99.87% | 0.13% |
All Japonica | 486 | 93.42% | 6.58% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 212 | 100.00% | 0.00% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 326 | 90.49% | 9.51% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 66 | 98.48% | 1.52% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1215878405 | C->T | LOC_Os12g27096(LOC_Os12g27096.1) | Synonymous |