Detailed information of SNP:
|
SNP ID:
sf1215878458(Gbrowse)
Chromosome: chr12 Position: 15878458 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 97.36% | 2.64% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 452 | 94.03% | 5.97% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 320 | 99.69% | 0.31% |
| Tropical Japonica | 72 | 63.89% | 36.11% |
| Japonica Intermediate | 60 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215878458 | C->T | LOC_Os12g27096(LOC_Os12g27096.1) | Non-Synonymous SNP |